library_name: transformers
tags: []
THIS PROTEIN VEC ADAPTATION WAS MODIFIED FROM https://github.com/tymor22/protein-vec
All credit for the original work goes to Tymor Hamamsy and the following authors of this paper https://www.biorxiv.org/content/10.1101/2023.11.26.568742v1
We have added a PyTorch wrapper for ProteinVec under src_run/EMBED_w_pvec.py. Additionally, we added inheritance to the config for Huggingface PretrainedConfig, and using these the weights for the entire ProteinVec have been uploaded to lhallee/ProteinVec
To use from hugggingface
git clone https://github.com/lhallee/Mixture-of-Experts-Sentence-Similarity
from EMBED_w_pvec import ProteinVec
model = ProteinVec.from_pretrained('lhallee/ProteinVec')
The tokenizer can be found in the ProtT5 Huggingface repos.
The license for the protein vec code
BSD 3-Clause License
Copyright (c) 2023, Tymor Hamamsy
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