Popular Vote (popV) model for automated cell type annotation of single-cell RNA-seq data. We provide here pretrained models for plug-in use in your own analysis. Follow our tutorial to learn how to use the model for cell type annotation.

Model description

Tabula Sapiens is a benchmark, first-draft human cell atlas of over 1.1M cells from 28 organs of 24 normal human subjects. This work is the product of the Tabula Sapiens Consortium. Taking the organs from the same individual controls for genetic background, age, environment, and epigenetic effects, and allows detailed analysis and comparison of cell types that are shared between tissues.

Link to CELLxGENE: Link to the data in the CELLxGENE browser for interactive exploration of the data and download of the source data.

Training Code URL: Not provided by uploader.

Metrics

We provide here accuracies for each of the experts and the ensemble model. The validation set accuracies are computed on a 10% random subset of the data that was not used for training.

Cell Type	N cells	celltypist	knn on bbknn	knn on harmony	knn on scvi	scanvi	svm	xgboost	Consensus Prediction
B cell	11554	0.98	0.98	0.97	0.98	0.99	0.96	0.97	0.99
CD4-positive, alpha-beta T cell	9738	0.47	0.78	0.79	0.69	0.68	0.36	0.46	0.78
fibroblast	8396	0.80	0.85	0.92	0.65	0.72	0.65	0.65	0.89
CD8-positive, alpha-beta T cell	7632	0.67	0.75	0.77	0.66	0.70	0.47	0.59	0.78
neutrophil	6830	0.95	0.97	0.97	0.88	0.90	0.92	0.94	0.98
macrophage	6928	0.76	0.86	0.91	0.77	0.75	0.68	0.70	0.88
stromal cell of ovary	3487	0.94	0.95	0.89	0.38	0.26	0.93	0.94	0.96
endothelial cell	3402	0.74	0.83	0.91	0.59	0.63	0.66	0.69	0.86
basal cell	3374	0.88	0.91	0.87	0.48	0.63	0.83	0.82	0.92
plasma cell	2781	0.96	0.97	0.97	0.97	0.97	0.96	0.95	0.98
bladder urothelial cell	2737	0.98	0.98	0.96	0.47	0.49	0.97	0.96	0.99
monocyte	2638	0.48	0.55	0.75	0.40	0.30	0.44	0.54	0.62
mesenchymal stem cell	2351	0.83	0.86	0.86	0.24	0.29	0.85	0.80	0.90
smooth muscle cell	1871	0.70	0.77	0.86	0.62	0.68	0.74	0.74	0.83
classical monocyte	1867	0.57	0.66	0.74	0.43	0.49	0.53	0.62	0.70
luminal epithelial cell of mammary gland	1539	0.97	0.74	0.95	0.62	0.76	0.97	0.96	0.98
capillary endothelial cell	1536	0.71	0.76	0.85	0.50	0.62	0.66	0.71	0.80
erythrocyte	1395	0.95	0.97	0.96	0.95	0.96	0.96	0.96	0.97
natural killer cell	1460	0.65	0.70	0.72	0.50	0.64	0.62	0.63	0.73
enterocyte of epithelium proper of duodenum	1356	0.87	0.89	0.82	0.35	0.00	0.86	0.88	0.94
stratified squamous epithelial cell	1245	0.83	0.85	0.83	0.42	0.57	0.83	0.81	0.87
acinar cell of salivary gland	1216	0.92	0.81	0.93	0.51	0.69	0.91	0.91	0.96
pulmonary alveolar type 2 cell	1146	0.94	0.95	0.96	0.62	0.66	0.95	0.95	0.96
conjunctival epithelial cell	1100	0.94	0.92	0.84	0.29	0.00	0.93	0.90	0.96
pericyte	1114	0.56	0.70	0.81	0.49	0.46	0.59	0.62	0.75
luminal cell of prostate epithelium	1034	0.86	0.93	0.94	0.53	0.06	0.92	0.91	0.94
cardiac endothelial cell	941	0.92	0.95	0.92	0.34	0.36	0.94	0.89	0.97
naive thymus-derived CD4-positive, alpha-beta T cell	993	0.19	0.02	0.25	0.01	0.16	0.20	0.23	0.19
kidney epithelial cell	938	0.98	0.97	0.96	0.42	0.45	0.99	0.98	0.99
hepatocyte	733	0.94	0.92	0.96	0.53	0.28	0.97	0.97	0.99
blood vessel smooth muscle cell	655	0.64	0.76	0.89	0.38	0.06	0.81	0.80	0.89
enterocyte of epithelium proper of ileum	664	0.93	0.92	0.74	0.08	0.01	0.95	0.94	0.95
T cell	647	0.34	0.32	0.48	0.09	0.16	0.27	0.34	0.48
mast cell	594	0.80	0.90	0.90	0.81	0.87	0.87	0.88	0.91
skeletal muscle satellite stem cell	587	0.95	0.95	0.96	0.55	0.77	0.87	0.92	0.96
regular atrial cardiac myocyte	559	0.80	0.63	0.74	0.19	0.32	0.86	0.92	0.91
pancreatic acinar cell	558	0.91	0.92	0.93	0.20	0.43	0.96	0.94	0.97
intermediate monocyte	576	0.37	0.38	0.53	0.13	0.31	0.34	0.43	0.51
mature NK T cell	508	0.16	0.28	0.43	0.15	0.35	0.31	0.38	0.50
mononuclear phagocyte	534	0.35	0.04	0.84	0.07	0.03	0.59	0.53	0.58
fibroblast of breast	497	0.91	0.33	0.95	0.27	0.14	0.80	0.69	0.93
vascular associated smooth muscle cell	493	0.63	0.39	0.66	0.08	0.14	0.50	0.60	0.67
vein endothelial cell	452	0.39	0.42	0.70	0.23	0.35	0.45	0.48	0.59
CD4-positive, alpha-beta thymocyte	431	0.20	0.06	0.49	0.08	0.23	0.30	0.36	0.38
enterocyte of epithelium of large intestine	428	0.66	0.75	0.61	0.25	0.38	0.74	0.80	0.78
myofibroblast cell	460	0.68	0.72	0.83	0.41	0.32	0.52	0.55	0.80
thymic fibroblast type 2	447	0.52	0.08	0.70	0.10	0.05	0.69	0.56	0.66
corneal epithelial cell	437	0.93	0.89	0.92	0.06	0.01	0.96	0.95	0.97
spermatid	382	0.89	0.09	0.98	0.21	0.70	0.98	0.97	0.99
duct epithelial cell	398	0.52	0.61	0.79	0.26	0.51	0.76	0.76	0.85
mesenchymal stem cell of adipose tissue	358	0.26	0.02	0.53	0.22	0.19	0.30	0.34	0.49
basal cell of prostate epithelium	326	0.64	0.73	0.88	0.13	0.09	0.80	0.73	0.82
endothelial cell of artery	355	0.19	0.62	0.70	0.36	0.48	0.52	0.54	0.71
stromal cell	345	0.48	0.52	0.44	0.06	0.14	0.64	0.74	0.66
thymic fibroblast type 1	317	0.44	0.16	0.78	0.09	0.01	0.57	0.48	0.64
pulmonary alveolar type 1 cell	302	0.90	0.92	0.94	0.66	0.79	0.95	0.90	0.95
spermatocyte	297	0.77	0.05	0.96	0.24	0.40	0.96	0.95	0.97
pancreatic ductal cell	272	0.78	0.87	0.85	0.24	0.35	0.93	0.86	0.93
regulatory T cell	250	0.13	0.01	0.13	0.03	0.22	0.16	0.18	0.32
ventricular cardiac muscle cell	274	0.22	0.41	0.68	0.16	0.18	0.76	0.87	0.80
endothelial cell of lymphatic vessel	226	0.62	0.59	0.84	0.44	0.55	0.53	0.60	0.69
hematopoietic precursor cell	200	0.47	0.69	0.69	0.61	0.47	0.44	0.55	0.66
retinal blood vessel endothelial cell	216	0.65	0.54	0.79	0.05	0.00	0.60	0.61	0.74
small intestine goblet cell	208	0.87	0.86	0.87	0.38	0.72	0.85	0.89	0.91
gamma-delta T cell	200	0.51	0.50	0.53	0.01	0.37	0.45	0.46	0.70
fibroblast of cardiac tissue	203	0.96	0.95	0.94	0.05	0.13	0.81	0.76	0.97
paneth cell of epithelium of small intestine	172	0.48	0.57	0.63	0.19	0.02	0.53	0.60	0.71
club cell	173	0.65	0.74	0.80	0.47	0.69	0.72	0.78	0.82
intestinal crypt stem cell of colon	186	0.63	0.77	0.64	0.14	0.01	0.72	0.75	0.84
progenitor cell of mammary luminal epithelium	184	0.97	0.00	0.98	0.65	0.87	0.94	0.90	0.98
epithelial cell	176	0.77	0.87	0.96	0.14	0.36	0.90	0.87	0.88
basophil	154	0.00	0.75	0.68	0.35	0.58	0.64	0.72	0.80
large intestine goblet cell	170	0.83	0.88	0.82	0.35	0.61	0.88	0.85	0.89
eye photoreceptor cell	135	0.87	0.88	0.89	0.81	0.79	0.94	0.96	0.93
epithelial cell of uterus	151	0.94	0.94	0.94	0.11	0.39	0.92	0.81	0.98
enterocyte of epithelium proper of small intestine	160	0.00	0.32	0.63	0.14	0.06	0.53	0.61	0.66
tissue-resident macrophage	136	0.37	0.01	0.69	0.07	0.29	0.35	0.43	0.65
acinar cell	136	0.87	0.87	0.96	0.80	0.67	0.90	0.79	0.91
non-classical monocyte	126	0.25	0.28	0.29	0.00	0.31	0.22	0.25	0.49
lung ciliated cell	130	0.70	0.50	0.96	0.63	0.58	0.92	0.88	0.93
activated CD8-positive, alpha-beta T cell	119	0.35	0.23	0.61	0.00	0.07	0.32	0.39	0.52
alveolar adventitial fibroblast	96	0.78	0.70	0.86	0.11	0.42	0.51	0.67	0.86
naive thymus-derived CD8-positive, alpha-beta T cell	105	0.09	0.02	0.32	0.00	0.06	0.09	0.11	0.20
adventitial cell	108	0.19	0.20	0.68	0.03	0.18	0.25	0.32	0.53
respiratory goblet cell	95	0.33	0.68	0.84	0.42	0.35	0.52	0.60	0.84
theca cell	91	0.46	0.31	0.72	0.16	0.55	0.68	0.57	0.75
myeloid leukocyte	101	0.27	0.46	0.54	0.20	0.10	0.25	0.23	0.57
keratocyte	92	0.52	0.42	0.56	0.00	0.04	0.50	0.35	0.58
enteroglial cell	96	0.52	0.88	0.90	0.63	0.79	0.92	0.82	0.83
innate lymphoid cell	84	0.17	0.18	0.29	0.00	0.18	0.15	0.20	0.36
erythroid progenitor cell	83	0.58	0.63	0.64	0.61	0.50	0.54	0.66	0.67
myometrial cell	75	0.49	0.37	0.77	0.04	0.15	0.55	0.55	0.79
endothelial cell of vascular tree	86	0.00	0.58	0.54	0.32	0.42	0.43	0.49	0.72
hematopoietic stem cell	72	0.59	0.60	0.68	0.60	0.71	0.54	0.71	0.77
salivary gland cell	85	0.00	0.44	0.85	0.51	0.46	0.55	0.55	0.84
granulocyte	86	0.14	0.15	0.42	0.14	0.13	0.19	0.26	0.37
CD8-positive, alpha-beta thymocyte	65	0.00	0.00	0.14	0.05	0.02	0.13	0.22	0.14
ciliated columnar cell of tracheobronchial tree	83	0.00	0.50	0.93	0.40	0.30	0.87	0.85	0.89
intrahepatic cholangiocyte	68	0.00	0.94	0.93	0.36	0.50	0.94	0.76	0.97
mural cell	52	0.00	0.73	0.95	0.18	0.27	0.35	0.45	0.89
intestinal crypt stem cell of small intestine	66	0.00	0.38	0.22	0.03	0.00	0.25	0.40	0.41
activated CD4-positive, alpha-beta T cell	44	0.04	0.00	0.13	0.00	0.03	0.08	0.09	0.17
myeloid dendritic cell	54	0.19	0.22	0.31	0.21	0.16	0.12	0.14	0.25
Mueller cell	47	0.45	0.47	0.61	0.19	0.47	0.76	0.81	0.74
fast muscle cell	53	0.24	0.64	0.91	0.67	0.80	0.76	0.77	0.89
platelet	50	0.88	0.96	0.95	0.64	0.77	0.91	0.81	0.96
myoepithelial cell	43	0.00	0.27	0.75	0.24	0.41	0.45	0.36	0.84
common myeloid progenitor	43	0.12	0.60	0.64	0.39	0.56	0.38	0.63	0.62
thymocyte	44	0.00	0.00	0.08	0.00	0.27	0.11	0.23	0.43
intestinal tuft cell	50	0.75	0.88	0.94	0.56	0.73	0.86	0.92	0.92
pancreatic stellate cell	41	0.70	0.29	0.93	0.03	0.00	0.67	0.47	0.88
tendon cell	44	0.00	0.25	0.30	0.00	0.11	0.27	0.24	0.47
microglial cell	35	0.15	0.35	0.48	0.00	0.06	0.16	0.11	0.33
muscle cell	34	0.44	0.06	0.96	0.69	0.79	0.74	0.81	0.91
enterocyte of epithelium proper of jejunum	34	0.00	0.00	0.06	0.11	0.04	0.38	0.37	0.56
mesothelial cell	27	0.50	0.68	0.91	0.60	0.39	0.74	0.58	0.64
colon endothelial cell	34	0.01	0.35	0.55	0.00	0.04	0.16	0.26	0.32
colon macrophage	33	0.17	0.35	0.72	0.11	0.00	0.24	0.22	0.64
serous cell of epithelium of trachea	30	0.33	0.29	0.81	0.12	0.06	0.42	0.42	0.82
ciliated epithelial cell	41	0.51	0.36	0.94	0.42	0.32	0.93	0.80	0.96
Schwann cell	30	0.00	0.59	0.75	0.49	0.30	0.54	0.56	0.72
mucus secreting cell	28	0.00	0.38	0.67	0.05	0.42	0.47	0.60	0.67
supporting cell of vestibular epithelium	23	0.92	0.54	0.67	0.56	0.59	0.98	0.81	0.98
enteroendocrine cell of small intestine	28	0.00	0.75	0.88	0.44	0.51	0.89	0.63	0.89
ovarian surface epithelial cell	22	0.00	0.64	0.90	0.00	0.48	0.77	0.61	0.81
transit amplifying cell of colon	27	0.00	0.51	0.40	0.06	0.29	0.41	0.43	0.59
glandular epithelial cell	22	0.00	0.38	0.47	0.07	0.04	0.84	0.68	0.87
melanocyte	20	0.00	0.62	0.83	0.29	0.50	0.64	0.64	0.95
tracheal goblet cell	27	0.00	0.71	0.72	0.64	0.62	0.64	0.61	0.76
hepatic stellate cell	28	0.00	0.07	0.49	0.00	0.07	0.42	0.51	0.65
bronchial smooth muscle cell	26	0.20	0.25	0.65	0.05	0.17	0.21	0.36	0.42
paneth cell of colon	29	0.00	0.20	0.55	0.20	0.27	0.61	0.40	0.69
tongue muscle cell	14	0.48	0.44	0.75	0.00	0.29	0.24	0.19	0.80
leukocyte	20	0.00	0.00	0.10	0.00	0.00	0.04	0.08	0.10
tuft cell of colon	19	0.00	0.63	0.79	0.24	0.16	0.90	0.78	0.94
slow muscle cell	27	0.00	0.81	0.88	0.35	0.74	0.81	0.71	0.92
ionocyte	21	0.00	0.43	0.73	0.00	0.67	0.79	0.73	0.77
connective tissue cell	14	0.00	0.00	1.00	0.12	0.00	0.45	0.23	0.44
sebum secreting cell	7	0.35	0.01	0.55	0.46	0.18	0.52	0.55	0.77
neuro-medullary thymic epithelial cell	11	0.20	0.13	0.47	0.23	0.19	0.24	0.31	0.32
endothelial cell of arteriole	10	0.00	0.31	0.89	0.13	0.19	0.57	0.47	0.84
male germ cell	16	0.00	0.22	0.88	0.00	0.29	0.90	0.90	0.97
type B pancreatic cell	9	0.00	1.00	1.00	0.80	0.88	0.94	0.74	1.00
hematopoietic cell	3	0.00	0.00	0.33	0.00	0.00	0.10	0.08	0.20
plasmacytoid dendritic cell	11	0.00	0.40	0.29	0.40	0.12	0.32	0.25	0.40
neuron	14	0.00	0.63	0.93	0.38	0.17	0.78	0.73	0.88
myeloid cell	7	0.00	0.00	0.00	0.00	0.06	0.11	0.24	0.00
myo-medullary thymic epithelial cell	8	0.00	0.00	0.84	0.43	0.71	0.82	0.62	0.67
Langerhans cell	6	0.00	0.25	0.73	0.18	0.26	0.42	0.16	0.73
interstitial cell of Cajal	6	0.00	0.00	1.00	0.36	0.29	0.63	0.43	0.92
peritubular myoid cell	9	0.00	0.00	0.20	0.00	0.21	0.36	0.33	0.36
retinal pigment epithelial cell	9	0.00	0.86	0.89	0.74	0.75	1.00	0.86	1.00
spermatogonium	5	0.00	0.00	0.25	0.00	0.00	0.77	0.56	0.29
retinal bipolar neuron	8	0.00	0.40	0.55	0.18	0.75	0.88	0.71	0.67
endothelial cell of venule	6	0.00	0.50	0.67	0.00	0.00	0.67	0.12	0.29
vestibular dark cell	4	0.00	0.00	0.40	0.00	0.15	0.80	0.89	0.67
pancreatic A cell	3	0.00	0.00	1.00	0.80	0.80	1.00	1.00	1.00
type L enteroendocrine cell	4	0.00	0.67	0.44	0.29	0.25	0.89	0.89	0.86
medullary thymic epithelial cell	10	0.00	0.00	0.46	0.00	0.11	0.89	0.48	0.46
adipocyte	4	0.00	0.00	0.67	0.00	0.40	1.00	0.44	0.67
transit amplifying cell of small intestine	1	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
taste receptor cell	5	0.00	0.00	0.33	0.00	0.05	0.20	0.21	0.29
enterochromaffin-like cell	1	0.00	0.00	0.00	0.00	1.00	1.00	0.40	1.00
enteroendocrine cell	2	0.00	0.00	0.67	0.00	0.09	1.00	0.33	1.00
pulmonary ionocyte	3	0.00	0.00	0.50	0.00	0.67	0.86	1.00	0.80
glial cell	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
oocyte	1	0.00	0.01	0.50	0.40	0.09	0.50	0.40	0.50
serous cell of epithelium of bronchus	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
radial glial cell	3	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
Leydig cell	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
pancreatic D cell	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
T follicular helper cell	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
retina horizontal cell	1	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
pancreatic PP cell	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
epithelial fate stem cell	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
mesenchymal cell	1	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
erythroid lineage cell	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
retinal ganglion cell	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00

The train accuracies are computed on the training data.

Cell Type	N cells	celltypist	knn on bbknn	knn on harmony	knn on scvi	scanvi	svm	xgboost	Consensus Prediction
B cell	102940	0.98	0.98	0.98	0.97	0.98	0.96	0.97	0.99
CD4-positive, alpha-beta T cell	87391	0.46	0.77	0.84	0.74	0.61	0.36	0.47	0.80
fibroblast	74939	0.80	0.83	0.95	0.78	0.85	0.65	0.65	0.92
CD8-positive, alpha-beta T cell	68645	0.67	0.75	0.84	0.75	0.65	0.48	0.61	0.80
neutrophil	62708	0.96	0.97	0.98	0.89	0.95	0.93	0.94	0.98
macrophage	62143	0.75	0.85	0.94	0.82	0.80	0.68	0.70	0.91
stromal cell of ovary	31515	0.94	0.94	0.92	0.61	0.97	0.93	0.94	0.98
endothelial cell	30297	0.75	0.80	0.95	0.75	0.85	0.67	0.69	0.92
basal cell	30152	0.88	0.89	0.92	0.65	0.83	0.83	0.82	0.93
plasma cell	24568	0.96	0.97	0.98	0.97	0.97	0.96	0.96	0.98
bladder urothelial cell	24504	0.98	0.98	0.98	0.65	0.96	0.98	0.96	0.99
monocyte	23115	0.49	0.52	0.84	0.63	0.55	0.46	0.55	0.72
mesenchymal stem cell	21146	0.84	0.85	0.92	0.52	0.93	0.86	0.80	0.95
smooth muscle cell	16554	0.70	0.74	0.91	0.76	0.83	0.73	0.74	0.88
classical monocyte	16333	0.56	0.63	0.82	0.67	0.63	0.54	0.63	0.76
luminal epithelial cell of mammary gland	13893	0.97	0.66	0.97	0.73	0.98	0.97	0.96	0.99
capillary endothelial cell	13760	0.69	0.72	0.91	0.69	0.82	0.66	0.72	0.86
erythrocyte	13215	0.95	0.97	0.97	0.96	0.97	0.96	0.96	0.97
natural killer cell	12771	0.65	0.70	0.80	0.66	0.65	0.62	0.63	0.76
enterocyte of epithelium proper of duodenum	12139	0.86	0.87	0.88	0.53	0.95	0.88	0.89	0.96
stratified squamous epithelial cell	11071	0.84	0.84	0.89	0.68	0.84	0.84	0.82	0.89
acinar cell of salivary gland	11021	0.93	0.79	0.96	0.69	0.93	0.91	0.92	0.97
pulmonary alveolar type 2 cell	10448	0.95	0.95	0.98	0.75	0.94	0.96	0.96	0.98
conjunctival epithelial cell	9987	0.94	0.89	0.90	0.44	0.95	0.93	0.90	0.97
pericyte	9770	0.55	0.66	0.88	0.68	0.70	0.61	0.64	0.81
luminal cell of prostate epithelium	9618	0.88	0.90	0.96	0.69	0.93	0.93	0.92	0.95
cardiac endothelial cell	9144	0.93	0.94	0.96	0.72	0.93	0.95	0.91	0.98
naive thymus-derived CD4-positive, alpha-beta T cell	8834	0.19	0.02	0.42	0.24	0.27	0.21	0.26	0.33
kidney epithelial cell	8340	0.98	0.97	0.96	0.62	0.97	0.99	0.97	0.99
hepatocyte	6681	0.94	0.90	0.98	0.74	0.99	0.97	0.97	0.99
blood vessel smooth muscle cell	5987	0.65	0.70	0.93	0.72	0.93	0.82	0.81	0.92
enterocyte of epithelium proper of ileum	5813	0.92	0.89	0.83	0.51	0.96	0.96	0.94	0.96
T cell	5643	0.37	0.27	0.63	0.35	0.45	0.27	0.35	0.59
mast cell	5627	0.82	0.90	0.94	0.90	0.94	0.90	0.91	0.95
skeletal muscle satellite stem cell	5581	0.95	0.94	0.98	0.79	0.94	0.88	0.93	0.97
regular atrial cardiac myocyte	5257	0.83	0.35	0.89	0.51	0.93	0.89	0.94	0.96
pancreatic acinar cell	4924	0.92	0.73	0.95	0.59	0.90	0.97	0.96	0.98
intermediate monocyte	4902	0.35	0.33	0.65	0.39	0.42	0.36	0.42	0.54
mature NK T cell	4886	0.18	0.27	0.58	0.37	0.41	0.35	0.44	0.57
mononuclear phagocyte	4802	0.36	0.00	0.92	0.46	0.90	0.60	0.54	0.89
fibroblast of breast	4773	0.92	0.20	0.97	0.65	0.91	0.83	0.71	0.97
vascular associated smooth muscle cell	4526	0.63	0.28	0.82	0.47	0.74	0.55	0.62	0.77
vein endothelial cell	4245	0.42	0.37	0.83	0.54	0.60	0.49	0.52	0.72
CD4-positive, alpha-beta thymocyte	4254	0.21	0.02	0.69	0.28	0.57	0.33	0.38	0.63
enterocyte of epithelium of large intestine	4139	0.67	0.73	0.77	0.49	0.79	0.77	0.82	0.82
myofibroblast cell	3976	0.62	0.64	0.88	0.61	0.64	0.52	0.55	0.86
thymic fibroblast type 2	3758	0.48	0.04	0.82	0.30	0.89	0.67	0.55	0.89
corneal epithelial cell	3750	0.93	0.74	0.93	0.64	0.94	0.96	0.94	0.96
spermatid	3627	0.91	0.00	0.98	0.83	0.96	0.98	0.97	0.99
duct epithelial cell	3491	0.53	0.54	0.89	0.58	0.80	0.78	0.77	0.89
mesenchymal stem cell of adipose tissue	3419	0.27	0.01	0.64	0.38	0.45	0.32	0.34	0.50
basal cell of prostate epithelium	3169	0.69	0.64	0.92	0.53	0.84	0.83	0.77	0.88
endothelial cell of artery	3115	0.21	0.58	0.81	0.54	0.60	0.54	0.56	0.78
stromal cell	3113	0.46	0.47	0.64	0.27	0.89	0.65	0.73	0.86
thymic fibroblast type 1	2953	0.51	0.12	0.89	0.27	0.88	0.60	0.52	0.87
pulmonary alveolar type 1 cell	2814	0.92	0.93	0.96	0.77	0.95	0.96	0.92	0.97
spermatocyte	2773	0.83	0.00	0.96	0.76	0.93	0.97	0.95	0.98
pancreatic ductal cell	2449	0.78	0.69	0.92	0.55	0.88	0.95	0.88	0.96
regulatory T cell	2399	0.12	0.01	0.24	0.07	0.25	0.19	0.20	0.38
ventricular cardiac muscle cell	2325	0.26	0.25	0.79	0.50	0.95	0.79	0.89	0.90
endothelial cell of lymphatic vessel	2212	0.62	0.58	0.92	0.72	0.74	0.58	0.64	0.79
hematopoietic precursor cell	1940	0.51	0.72	0.83	0.74	0.61	0.52	0.61	0.77
retinal blood vessel endothelial cell	1872	0.63	0.44	0.89	0.30	0.96	0.65	0.65	0.93
small intestine goblet cell	1836	0.90	0.87	0.91	0.64	0.78	0.87	0.91	0.93
gamma-delta T cell	1777	0.47	0.49	0.70	0.18	0.40	0.46	0.44	0.71
fibroblast of cardiac tissue	1744	0.94	0.91	0.98	0.23	0.94	0.79	0.78	0.97
paneth cell of epithelium of small intestine	1681	0.46	0.58	0.76	0.52	0.69	0.62	0.69	0.80
club cell	1574	0.65	0.75	0.88	0.57	0.70	0.76	0.80	0.87
intestinal crypt stem cell of colon	1546	0.66	0.74	0.80	0.54	0.80	0.77	0.81	0.89
progenitor cell of mammary luminal epithelium	1510	0.98	0.00	0.99	0.92	0.91	0.95	0.91	0.98
epithelial cell	1499	0.79	0.87	0.98	0.57	0.93	0.92	0.90	0.94
basophil	1515	0.00	0.66	0.83	0.76	0.84	0.68	0.78	0.92
large intestine goblet cell	1387	0.81	0.86	0.91	0.60	0.90	0.90	0.89	0.91
eye photoreceptor cell	1398	0.87	0.91	0.97	0.90	0.93	0.98	0.97	0.97
epithelial cell of uterus	1266	0.89	0.87	0.97	0.52	0.89	0.89	0.82	0.98
enterocyte of epithelium proper of small intestine	1255	0.00	0.19	0.81	0.48	0.83	0.57	0.67	0.83
tissue-resident macrophage	1219	0.38	0.00	0.80	0.37	0.57	0.35	0.48	0.69
acinar cell	1209	0.88	0.87	0.97	0.86	0.81	0.88	0.83	0.91
non-classical monocyte	1158	0.30	0.32	0.47	0.16	0.33	0.25	0.30	0.57
lung ciliated cell	1079	0.71	0.47	0.98	0.84	0.93	0.92	0.92	0.97
activated CD8-positive, alpha-beta T cell	1028	0.33	0.16	0.81	0.37	0.45	0.36	0.46	0.64
alveolar adventitial fibroblast	1017	0.77	0.59	0.92	0.46	0.68	0.61	0.73	0.94
naive thymus-derived CD8-positive, alpha-beta T cell	951	0.10	0.01	0.49	0.12	0.25	0.14	0.14	0.49
adventitial cell	937	0.20	0.04	0.87	0.40	0.58	0.27	0.34	0.74
respiratory goblet cell	945	0.36	0.66	0.88	0.62	0.62	0.55	0.60	0.86
theca cell	947	0.47	0.13	0.84	0.61	0.64	0.74	0.64	0.85
myeloid leukocyte	901	0.25	0.37	0.80	0.32	0.71	0.30	0.27	0.82
keratocyte	909	0.54	0.33	0.72	0.17	0.55	0.54	0.40	0.71
enteroglial cell	894	0.54	0.83	0.95	0.80	0.96	0.93	0.83	0.90
innate lymphoid cell	887	0.19	0.16	0.52	0.17	0.53	0.22	0.27	0.56
erythroid progenitor cell	888	0.62	0.64	0.80	0.77	0.69	0.67	0.74	0.78
myometrial cell	842	0.57	0.13	0.86	0.56	0.78	0.62	0.69	0.86
endothelial cell of vascular tree	789	0.00	0.52	0.76	0.47	0.68	0.46	0.54	0.83
hematopoietic stem cell	786	0.63	0.61	0.82	0.76	0.77	0.70	0.84	0.87
salivary gland cell	765	0.00	0.16	0.91	0.69	0.80	0.59	0.60	0.91
granulocyte	683	0.10	0.17	0.60	0.52	0.51	0.22	0.25	0.74
CD8-positive, alpha-beta thymocyte	666	0.00	0.00	0.43	0.10	0.37	0.22	0.30	0.61
ciliated columnar cell of tracheobronchial tree	630	0.00	0.36	0.97	0.73	0.90	0.90	0.88	0.98
intrahepatic cholangiocyte	597	0.00	0.87	0.94	0.60	0.94	0.92	0.79	0.98
mural cell	566	0.00	0.65	0.95	0.51	0.77	0.41	0.50	0.95
intestinal crypt stem cell of small intestine	521	0.00	0.34	0.47	0.18	0.40	0.41	0.57	0.66
activated CD4-positive, alpha-beta T cell	528	0.04	0.00	0.37	0.13	0.19	0.13	0.16	0.26
myeloid dendritic cell	516	0.16	0.21	0.53	0.28	0.25	0.17	0.21	0.36
Mueller cell	459	0.51	0.56	0.82	0.55	0.79	0.92	0.92	0.90
fast muscle cell	442	0.28	0.53	0.93	0.83	0.83	0.82	0.82	0.90
platelet	444	0.82	0.90	0.92	0.89	0.68	0.87	0.72	0.92
myoepithelial cell	443	0.00	0.28	0.89	0.65	0.50	0.53	0.46	0.88
common myeloid progenitor	413	0.13	0.57	0.80	0.65	0.65	0.66	0.82	0.87
thymocyte	411	0.00	0.00	0.43	0.09	0.32	0.20	0.40	0.80
intestinal tuft cell	398	0.78	0.86	0.97	0.81	0.89	0.94	0.98	0.97
pancreatic stellate cell	395	0.70	0.19	0.95	0.39	0.73	0.69	0.52	0.81
tendon cell	376	0.00	0.36	0.62	0.17	0.30	0.39	0.33	0.80
microglial cell	373	0.14	0.36	0.74	0.12	0.51	0.27	0.19	0.67
muscle cell	372	0.51	0.10	0.97	0.88	0.84	0.81	0.95	0.92
enterocyte of epithelium proper of jejunum	371	0.00	0.00	0.60	0.37	0.68	0.59	0.51	0.87
mesothelial cell	323	0.56	0.67	0.93	0.84	0.75	0.83	0.71	0.81
colon endothelial cell	314	0.02	0.22	0.83	0.31	0.68	0.28	0.39	0.79
colon macrophage	295	0.17	0.17	0.82	0.38	0.76	0.30	0.29	0.79
serous cell of epithelium of trachea	296	0.34	0.04	0.86	0.49	0.32	0.53	0.56	0.77
ciliated epithelial cell	279	0.47	0.15	0.97	0.72	0.96	0.94	0.90	0.98
Schwann cell	287	0.00	0.63	0.84	0.69	0.47	0.74	0.71	0.84
mucus secreting cell	242	0.00	0.30	0.86	0.71	0.53	0.64	0.75	0.88
supporting cell of vestibular epithelium	247	0.88	0.09	0.52	0.58	0.86	0.99	0.86	0.99
enteroendocrine cell of small intestine	236	0.00	0.56	0.82	0.62	0.81	0.90	0.75	0.94
ovarian surface epithelial cell	219	0.00	0.67	0.92	0.83	0.79	0.80	0.72	0.93
transit amplifying cell of colon	210	0.00	0.45	0.64	0.30	0.44	0.50	0.59	0.82
glandular epithelial cell	213	0.00	0.25	0.86	0.54	0.78	0.88	0.73	0.97
melanocyte	214	0.00	0.54	0.84	0.63	0.77	0.67	0.77	0.93
tracheal goblet cell	205	0.00	0.62	0.84	0.70	0.81	0.67	0.68	0.92
hepatic stellate cell	195	0.00	0.01	0.76	0.16	0.53	0.45	0.47	0.77
bronchial smooth muscle cell	194	0.17	0.27	0.72	0.26	0.40	0.30	0.46	0.62
paneth cell of colon	188	0.00	0.19	0.72	0.41	0.61	0.67	0.50	0.92
tongue muscle cell	188	0.49	0.53	0.87	0.34	0.50	0.46	0.32	0.94
leukocyte	181	0.00	0.04	0.59	0.12	0.52	0.11	0.20	0.69
tuft cell of colon	159	0.00	0.48	0.83	0.45	0.50	0.90	0.77	0.94
slow muscle cell	147	0.00	0.71	0.88	0.76	0.66	0.82	0.94	0.94
ionocyte	139	0.00	0.32	0.83	0.57	0.74	0.71	0.74	0.94
connective tissue cell	138	0.00	0.00	0.96	0.82	0.65	0.51	0.24	0.97
sebum secreting cell	128	0.52	0.02	0.89	0.56	0.82	0.75	0.77	0.91
neuro-medullary thymic epithelial cell	124	0.30	0.09	0.74	0.67	0.41	0.46	0.49	0.52
endothelial cell of arteriole	122	0.00	0.26	0.89	0.20	0.69	0.63	0.63	0.96
male germ cell	100	0.00	0.00	0.79	0.24	0.73	1.00	0.84	1.00
type B pancreatic cell	93	0.00	0.88	0.94	0.91	0.97	1.00	0.89	0.99
hematopoietic cell	97	0.00	0.02	0.64	0.23	0.19	0.39	0.38	0.76
plasmacytoid dendritic cell	88	0.00	0.43	0.67	0.61	0.17	0.38	0.36	0.74
neuron	68	0.00	0.48	0.99	0.66	0.54	0.69	0.62	0.96
myeloid cell	74	0.00	0.00	0.49	0.00	0.28	0.36	0.31	0.86
myo-medullary thymic epithelial cell	69	0.00	0.00	0.94	0.81	0.87	0.71	0.95	0.96
Langerhans cell	70	0.00	0.27	0.76	0.47	0.12	0.48	0.31	0.73
interstitial cell of Cajal	65	0.00	0.00	0.95	0.68	0.33	0.70	0.52	0.96
peritubular myoid cell	58	0.00	0.00	0.65	0.15	0.36	0.72	0.57	0.97
retinal pigment epithelial cell	58	0.00	0.78	0.93	0.89	0.84	1.00	0.93	0.99
spermatogonium	59	0.00	0.03	0.53	0.09	0.12	0.91	0.72	0.88
retinal bipolar neuron	52	0.00	0.60	0.70	0.42	0.68	0.91	0.91	0.87
endothelial cell of venule	46	0.00	0.00	0.94	0.21	0.31	0.81	0.60	1.00
vestibular dark cell	45	0.00	0.31	0.59	0.08	0.47	0.98	0.73	0.97
pancreatic A cell	45	0.00	0.00	0.93	0.87	0.87	0.99	0.97	0.98
type L enteroendocrine cell	40	0.00	0.48	0.78	0.37	0.79	0.89	0.88	0.94
medullary thymic epithelial cell	33	0.00	0.00	0.57	0.32	0.21	0.88	0.57	0.75
adipocyte	34	0.00	0.00	0.75	0.32	0.45	0.78	0.74	0.87
transit amplifying cell of small intestine	33	0.00	0.00	0.16	0.06	0.30	0.54	0.79	0.88
taste receptor cell	27	0.00	0.00	0.85	0.39	0.14	0.52	0.27	0.91
enterochromaffin-like cell	26	0.00	0.33	0.87	0.31	0.79	0.96	0.84	1.00
enteroendocrine cell	23	0.00	0.08	0.93	0.46	0.67	0.98	0.84	0.98
pulmonary ionocyte	22	0.00	0.08	0.88	0.37	0.42	0.83	0.92	1.00
glial cell	20	0.00	0.00	0.68	0.30	0.40	0.40	0.29	0.83
oocyte	17	0.00	0.01	0.94	0.74	0.16	0.92	0.89	0.94
serous cell of epithelium of bronchus	15	0.00	0.29	0.80	0.67	0.39	0.53	1.00	1.00
radial glial cell	10	0.00	0.00	0.00	0.00	0.13	0.41	0.19	0.71
Leydig cell	10	0.00	0.00	0.50	0.60	0.36	0.83	0.69	0.95
pancreatic D cell	9	0.00	0.00	0.50	0.20	0.64	1.00	0.90	1.00
T follicular helper cell	6	0.00	0.00	0.00	0.00	0.10	0.27	0.19	0.50
retina horizontal cell	4	0.00	0.00	0.00	0.00	0.13	0.47	1.00	0.86
pancreatic PP cell	2	0.00	0.00	0.00	0.00	0.33	1.00	1.00	0.67
epithelial fate stem cell	2	0.00	0.00	0.00	0.00	0.01	1.00	0.80	1.00
mesenchymal cell	1	0.00	0.00	0.00	0.00	0.10	0.01	1.00	0.00
erythroid lineage cell	2	0.00	0.00	0.00	0.00	0.06	1.00	0.80	0.00
retinal ganglion cell	1	0.00	0.00	0.00	0.00	0.01	0.00	0.08	1.00

References

Tabula Sapiens reveals transcription factor expression, senescence effects, and sex-specific features in cell types from 28 human organs and tissues, The Tabula Sapiens Consortium; bioRxiv, doi: https://doi.org/10.1101/2024.12.03.626516

popV
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tabula_sapiens_All_Cells

Model description

Metrics

References

Collection including popV/tabula_sapiens_All_Cells

Tabula Sapiens