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fatmacankara
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Commit
·
9616fbd
1
Parent(s):
d1d665f
Update code/add_alignment.py
Browse files- code/add_alignment.py +2 -1
code/add_alignment.py
CHANGED
@@ -25,6 +25,7 @@ def do_alignment(identifier, uniprotSequence, pdbSequence, alignment_path):
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alignments = aligner.align(uniprotSequence, pdbSequence)
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print('Alignments')
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print(alignments)
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alignments = (list(alignments))
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alignment_list = []
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for alignment in alignments:
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@@ -36,7 +37,7 @@ def do_alignment(identifier, uniprotSequence, pdbSequence, alignment_path):
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alignment_list.append(alignment)
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print(alignment_list)
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return alignment_list
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-
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def mutation_position_on_pdb(alignment_list, pos):
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which_alignment_to_go = 0
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alignments = aligner.align(uniprotSequence, pdbSequence)
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print('Alignments')
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print(alignments)
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+
"""
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alignments = (list(alignments))
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alignment_list = []
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for alignment in alignments:
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alignment_list.append(alignment)
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print(alignment_list)
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return alignment_list
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+
"""
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def mutation_position_on_pdb(alignment_list, pos):
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which_alignment_to_go = 0
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